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Report for Sequence Feature Glyma08g45531

Feature Type:gene_model
Chromosome:Gm08
Start:44882984
stop:44884058
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73260AT Annotation by Michelle Graham. TAIR10: kunitz trypsin inhibitor 1 | chr1:27547410-27548057 REVERSE LENGTH=215 SoyBaseE_val: 3.00E-18ISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0012501GO-bp Annotation by Michelle Graham. GO Biological Process: programmed cell death SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0004866GO-mf Annotation by Michelle Graham. GO Molecular Function: endopeptidase inhibitor activity SoyBaseN/AISS
PF00197PFAM Trypsin and protease inhibitor JGI ISS
UniRef100_Q39898UniRef Annotation by Michelle Graham. Best UniRef hit: Kunitz trypsin inhibitor n=3 Tax=Glycine max RepID=Q39898_SOYBN SoyBaseE_val: 1.00E-158ISS
UniRef100_Q39898UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kunitz trypsin inhibitor n=3 Tax=Glycine max RepID=Q39898_SOYBN SoyBaseE_val: 1.00E-158ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g45531 not represented in the dataset

Glyma08g45531 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g341500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g45531.1   sequence type=CDS   gene model=Glyma08g45531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGCACCATCTTCTTTGCTCTCTTTCTCTTTTGTGCCTTCACCACCTCATACCTACCTTCAGCCATCGCTGATTTCGTGCTCGATAATGAAGGTAACCCTCTTGAAAATGGTGGCACATATTATATCTTGTCAGACATAACAGCATTTGGTGGAATAAGAGCAGCCCCAACGGGAAATGAAAGATGCCCTCTCACTGTGGTGCAATCTCGCAATGAGCTCGACAAAGGGATTGGAACAATCATCTCGTCCCCATATCGAATCCGTTTTATCGCCGAAGGCCATCCTTTGAGCCTTAAGTTCGATTCATTTGCAGTTATAATGCTGTGTGTTGGAATTCCTACCGAGTGGTCTGTTGTGGAGGATCTACCAGAAGGACCTGCTGTTAAAATTGGTGAGAACAAAGATGCAATGGATGGTTGGTTTAGACTTGAGAGAGTTTCTGATGATGAATTCAATAACTATAAGCTTGTGTTCTGTCCACAGCAAGCTGAGGATGACAAATGTGGGGATATTGGGATTAGTATTGATCATGATGATGGAACCAGGCGTTTGGTGGTGTCTAAGAACAAACCGTTAGTGGTTCAGTTTCAAAAACTTGATAAAGAATCACTGGCCAAGAAAAATCATGGCCTTTCTCGCAGTGAGTGA

>Glyma08g45531.1   sequence type=predicted peptide   gene model=Glyma08g45531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSTIFFALFLFCAFTTSYLPSAIADFVLDNEGNPLENGGTYYILSDITAFGGIRAAPTGNERCPLTVVQSRNELDKGIGTIISSPYRIRFIAEGHPLSLKFDSFAVIMLCVGIPTEWSVVEDLPEGPAVKIGENKDAMDGWFRLERVSDDEFNNYKLVFCPQQAEDDKCGDIGISIDHDDGTRRLVVSKNKPLVVQFQKLDKESLAKKNHGLSRSE*







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